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1

Revealing the vectors of cellular identity with single-cell genomics

Wagner, Allon, Regev, Aviv, Yosef, Nir

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

2

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

Segal, Eran, Shapira, Michael, Regev, Aviv, Pe'er, Dana, Botstein, David, Koller, Daphne, Friedman, Nir

Journal:

Nature Genetics

Year:

2003

Language:

english

File:

PDF, 2.19 MB

english, 2003

3

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

Gat-Viks, Irit, Chevrier, Nicolas, Wilentzik, Roni, Eisenhaure, Thomas, Raychowdhury, Raktima, Steuerman, Yael, Shalek, Alex K, Hacohen, Nir, Amit, Ido, Regev, Aviv

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

4

Natural history and evolutionary principles of gene duplication in fungi

Wapinski, Ilan, Pfeffer, Avi, Friedman, Nir, Regev, Aviv

Journal:

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

5

Structure and function of a transcriptional network activated by the MAPK Hog1

Capaldi, Andrew P, Kaplan, Tommy, Liu, Ying, Habib, Naomi, Regev, Aviv, Friedman, Nir, O'Shea, Erin K

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 912 KB

english, 2008

6

From signatures to models: understanding cancer using microarrays

Segal, Eran, Friedman, Nir, Kaminski, Naftali, Regev, Aviv, Koller, Daphne

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 1.18 MB

english, 2005

7

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Levin, Joshua Z, Yassour, Moran, Adiconis, Xian, Nusbaum, Chad, Thompson, Dawn Anne, Friedman, Nir, Gnirke, Andreas, Regev, Aviv

Journal:

Year:

2010

Language:

english

File:

PDF, 1.48 MB

english, 2010

8

Strategies to discover regulatory circuits of the mammalian immune system

Amit, Ido, Regev, Aviv, Hacohen, Nir

Journal:

Nature Reviews Immunology

Year:

2011

Language:

english

File:

PDF, 499 KB

english, 2011

9

Induction and molecular signature of pathogenic TH17 cells

Lee, Youjin, Awasthi, Amit, Yosef, Nir, Quintana, Francisco J, Xiao, Sheng, Peters, Anneli, Wu, Chuan, Kleinewietfeld, Markus, Kunder, Sharon, Hafler, David A, Sobel, Raymond A, Regev, Aviv, Kuchroo,

Journal:

Nature Immunology

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

10

Necrotizing periorbital cellulitis following aesthetic rhinoplasty

Josef Haik, Eli Regev, Eran Bar-Meir, Jeremy Tamir, Nir Shoham, Oren Goldan, David Mendes, Arie Orenstein, Eyal Winkler

Journal:

Aesthetic Surgery Journal

Year:

2005

Language:

english

File:

PDF, 185 KB

english, 2005

11

A Physical and Regulatory Map of Host-Influenza Interactions Reveals Pathways in H1N1 Infection

Sagi D. Shapira, Irit Gat-Viks, Bennett O.V. Shum, Amelie Dricot, Marciela M. de Grace, Liguo Wu, Piyush B. Gupta, Tong Hao, Serena J. Silver, David E. Root, David E. Hill, Aviv Regev, Nir Hacohen

Journal:

Year:

2009

Language:

english

File:

PDF, 1.53 MB

english, 2009

12

Impulse Control: Temporal Dynamics in Gene Transcription

Nir Yosef, Aviv Regev

Journal:

Year:

2011

Language:

english

File:

PDF, 882 KB

english, 2011

13

A module map showing conditional activity of expression modules in cancer

Segal, Eran, Friedman, Nir, Koller, Daphne, Regev, Aviv

Journal:

Nature Genetics

Year:

2004

Language:

english

File:

PDF, 968 KB

english, 2004

14

A functional selection model explains evolutionary robustness despite plasticity in regulatory networks

Habib, Naomi, Wapinski, Ilan, Margalit, Hanah, Regev, Aviv, Friedman, Nir

Journal:

Molecular Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.06 MB

english, 2012

15

Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1

Wu, Chuan, Yosef, Nir, Thalhamer, Theresa, Zhu, Chen, Xiao, Sheng, Kishi, Yasuhiro, Regev, Aviv, Kuchroo, Vijay K.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.65 MB

english, 2013

16

The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells

Kurachi, Makoto, Barnitz, R Anthony, Yosef, Nir, Odorizzi, Pamela M, DiIorio, Michael A, Lemieux, Madeleine E, Yates, Kathleen, Godec, Jernej, Klatt, Martin G, Regev, Aviv, Wherry, E John, Haining, W

Journal:

Nature Immunology

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

17

Interface dynamics and domain growth in thermally bistable fluids

Shaviv, Nir J., Regev, Oded

Journal:

Physical Review E

Year:

1994

File:

PDF, 1.81 MB

1994

18

High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies

Rabani, Michal, Raychowdhury, Raktima, Jovanovic, Marko, Rooney, Michael, Stumpo, Deborah J., Pauli, Andrea, Hacohen, Nir, Schier, Alexander F., Blackshear, Perry J., Friedman, Nir, Amit, Ido, Regev,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

19

Pluripotency Transcription Factor Oct4 Mediates Stepwise Nucleosome Demethylation and Depletion

Shakya, Arvind, Callister, Catherine, Goren, Alon, Yosef, Nir, Garg, Neha, Khoddami, Vahid, Nix, David, Regev, Aviv, Tantin, Dean

Journal:

Molecular and Cellular Biology

Year:

2015

Language:

english

File:

PDF, 7.11 MB

english, 2015

20

Postexposure Treatment with Doxycycline for the Prevention of Tick-Borne Relapsing Fever

Hasin, Tal, Davidovitch, Nadav, Cohen, Regev, Dagan, Tsachi, Romem, Ayal, Orr, Nadav, Klement, Eyal, Lubezky, Nir, Kayouf, Raid, Sela, Tamar, Keller, Nathan, Derazne, Estela, Halperin, Tamar, Yavzori,

Journal:

Boston Medical and Surgical Journal

Year:

2006

Language:

english

File:

PDF, 172 KB

english, 2006

21

ImmVar project: Insights and design considerations for future studies of “healthy” immune variation

De Jager, Philip L., Hacohen, Nir, Mathis, Diane, Regev, Aviv, Stranger, Barbara E., Benoist, Christophe

Journal:

Seminars in Immunology

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

22

Central Nervous System Manifestation of IgG4-Related Disease

Regev, Keren, Nussbaum, Tami, Cagnano, Emanuela, Giladi, Nir, Karni, Arnon

Journal:

Year:

2014

Language:

english

File:

PDF, 305 KB

english, 2014

23

A Simple Tool to Reach Populations at Risk for Developing Dementia and Alzheimer’s Disease

Bregman, Noa, Regev, Keren, Moore, Orna, Giladi, Nir, Ash, Elissa

Journal:

Journal of Alzheimer's Disease

Year:

2015

Language:

english

File:

PDF, 151 KB

english, 2015

24

Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response

Weiner, Assaf, Chen, Hsiuyi V., Liu, Chih Long, Rahat, Ayelet, Klien, Avital, Soares, Luis, Gudipati, Mohanram, Pfeffner, Jenna, Regev, Aviv, Buratowski, Stephen, Pleiss, Jeffrey A., Friedman, Nir, Ra

Journal:

Year:

2012

Language:

english

File:

PDF, 8.12 MB

english, 2012

25

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

Gaublomme, Jellert T., Yosef, Nir, Lee, Youjin, Gertner, Rona S., Yang, Li V., Wu, Chuan, Pandolfi, Pier Paolo, Mak, Tak, Satija, Rahul, Shalek, Alex K., Kuchroo, Vijay K., Park, Hongkun, Regev, Aviv

Journal:

Year:

2015

Language:

english

File:

PDF, 3.27 MB

english, 2015

26

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

Fields, Alexander P., Rodriguez, Edwin H., Jovanovic, Marko, Stern-Ginossar, Noam, Haas, Brian J., Mertins, Philipp, Raychowdhury, Raktima, Hacohen, Nir, Carr, Steven A., Ingolia, Nicholas T., Regev,

Journal:

Year:

2015

Language:

english

File:

PDF, 18.22 MB

english, 2015

27

[IEEE GLOBECOM 2015 - 2015 IEEE Global Communications Conference - San Diego, CA, USA (2015.12.6-2015.12.10)] 2015 IEEE Global Communications Conference (GLOBECOM) - Maximum Likelihood Detection of Nonlinearly Distorted OFDM Signal

Regev, Nir, Iofedov, Ilia, Wulich, Dov

Year:

2014

Language:

english

File:

PDF, 205 KB

english, 2014

28

[IEEE GLOBECOM 2015 - 2015 IEEE Global Communications Conference - San Diego, CA, USA (2015.12.6-2015.12.10)] 2015 IEEE Global Communications Conference (GLOBECOM) - Maximum Likelihood Detection of Nonlinearly Distorted OFDM Signal

Regev, Nir, Iofedov, Ilia, Wulich, Dov

Year:

2015

Language:

english

File:

PDF, 205 KB

english, 2015

29

An Extended Loop of the Pup Ligase, PafA, Mediates Interaction with Protein Targets

Regev, Ofir, Korman, Maayan, Hecht, Nir, Roth, Ziv, Forer, Nadav, Zarivach, Raz, Gur, Eyal

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

30

Protein C receptor (PROCR) is a negative regulator of Th17 pathogenicity

Kishi, Yasuhiro, Kondo, Takaaki, Xiao, Sheng, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Wang, Chao, Chihara, Norio, Regev, Aviv, Joller, Nicole, Kuchroo, Vijay K.

Journal:

Journal of Experimental Medicine

Year:

2016

Language:

english

File:

PDF, 2.33 MB

english, 2016

31

A minimal length rigid helical peptide motif allows rational design of modular surfactants

Mondal, Sudipta, Varenik, Maxim, Bloch, Daniel Nir, Atsmon-Raz, Yoav, Jacoby, Guy, Adler-Abramovich, Lihi, Shimon, Linda J.W., Beck, Roy, Miller, Yifat, Regev, Oren, Gazit, Ehud

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.21 MB

english, 2017

32

Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation

Karwacz, Katarzyna, Miraldi, Emily R, Pokrovskii, Maria, Madi, Asaf, Yosef, Nir, Wortman, Ivo, Chen, Xi, Watters, Aaron, Carriero, Nicholas, Awasthi, Amit, Regev, Aviv, Bonneau, Richard, Littman, Dan,

Journal:

Nature Immunology

Year:

2017

Language:

english

File:

PDF, 2.00 MB

english, 2017

33

How to control an intracellular proteolytic system: Coordinated regulatory switches in the mycobacterial pup-proteasome system

Gur, Eyal, Korman, Maayan, Hecht, Nir, Regev, Ofir, Schlussel, Shai, Silberberg, Nimrod, Elharar, Yifat

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

Year:

2017

Language:

english

File:

PDF, 950 KB

english, 2017

34

Graphene-induced enhancement of water vapor barrier in polymer nanocomposites

Peretz Damari, Sivan, Cullari, Lucas, Nadiv, Roey, Nir, Yiftach, Laredo, Dalia, Grunlan, Jaime, Regev, Oren

Journal:

Composites Part B: Engineering

Year:

2017

Language:

english

File:

PDF, 6.60 MB

english, 2017

35

[IEEE 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Jeju Island, South Korea (2017.7.11-2017.7.15)] 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - A simple, remote, video based breathing monitor

Regev, Nir, Wulich, Dov

Year:

2017

Language:

english

File:

PDF, 795 KB

english, 2017

36

[IEEE 2017 IEEE 28th Annual International Symposium on Personal, Indoor, and Mobile Radio Communications (PIMRC) - Montreal, QC, Canada (2017.10.8-2017.10.13)] 2017 IEEE 28th Annual International Symposium on Personal, Indoor, and Mobile Radio Communications (PIMRC) - On optimal receiver for nonlinearly distorted single carrier signal

Iofedov, Ilia Yoffe, Regev, Nir, Wulich, Dov

Year:

2017

Language:

english

File:

PDF, 489 KB

english, 2017

37

Proteasome accessory factor A (PafA) transferase activity makes sense in the light of its homology with glutamine synthetase

Hecht, Nir, Regev, Ofir, Dovrat, Daniel, Aharoni, Amir, Gur, Eyal

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

38

Antibiotic treatment for invasive nonpregnancy-associated listeriosis and mortality: a retrospective cohort study

Dickstein, Yaakov, Oster, Yonatan, Shimon, Orit, Nesher, Lior, Yahav, Dafna, Wiener-Well, Yonit, Cohen, Regev, Ben-Ami, Ronen, Weinberger, Miriam, Rahav, Galia, Maor, Yasmin, Chowers, Michal, Nir-Paz,

Journal:

European Journal of Clinical Microbiology & Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 331 KB

english, 2019

39

[IEEE 2019 IEEE Radar Conference (RadarConf19) - Boston, MA, USA (2019.4.22-2019.4.26)] 2019 IEEE Radar Conference (RadarConf) - On Direction of Arrival Estimation with 1-bit Quantizer

Yoffe, Ilia, Regev, Nir, Wulich, Dov

Year:

2019

Language:

english

File:

PDF, 2.36 MB

english, 2019

40

Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

de Boer, Carl G., Vaishnav, Eeshit Dhaval, Sadeh, Ronen, Abeyta, Esteban Luis, Friedman, Nir, Regev, Aviv

Journal:

Nature Biotechnology

Year:

2019

File:

PDF, 3.09 MB

2019

41

Multi-Modal, Remote Breathing Monitor

Regev, Nir, Wulich, Dov

Journal:

Year:

2020

Language:

english

File:

PDF, 9.93 MB

english, 2020

42

Locus coeruleus norepinephrine activity mediates sensory-evoked awakenings from sleep

Hayat, Hanna, Regev, Noa, Matosevich, Noa, Sales, Anna, Paredes-Rodriguez, Elena, Krom, Aaron J., Bergman, Lottem, Li, Yong, Lavigne, Marina, Kremer, Eric J., Yizhar, Ofer, Pickering, Anthony E., Nir,

Journal:

Science Advances

Year:

2020

File:

PDF, 5.54 MB

2020

43

Sleep Differentially Affects Early and Late Neuronal Responses to Sounds in Auditory and Perirhinal Cortices

Sela, Yaniv, Krom, Aaron Joseph, Bergman, Lottem, Regev, Noa, Nir, Yuval

Journal:

Journal of Neuroscience

Year:

2020

File:

PDF, 3.86 MB

2020

44

MAUDE: inferring expression changes in sorting-based CRISPR screens

de Boer, Carl G., Ray, John P., Hacohen, Nir, Regev, Aviv

Journal:

Year:

2020

File:

PDF, 2.05 MB

2020

45

Absence of in-flight transmission of SARS-CoV-2 likely due to use of face masks on board

Nir-Paz, Ran, Grotto, Itamar, Strolov, Israel, Salmon, Asher, Mandelboim, Michal, Mendelson, Ella, Regev-Yochay, Gili

Journal:

Journal of Travel Medicine

Year:

2020

File:

PDF, 416 KB

2020

46

Author Correction: Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

de Boer, Carl G., Vaishnav, Eeshit Dhaval, Sadeh, Ronen, Abeyta, Esteban Luis, Friedman, Nir, Regev, Aviv

Journal:

Nature Biotechnology

Year:

2020

File:

PDF, 519 KB

2020

47

[IEEE 2020 IEEE Texas Symposium on Wireless and Microwave Circuits and Systems (WMCS) - Waco, TX, USA (2020.5.26-2020.5.28)] 2020 IEEE Texas Symposium on Wireless and Microwave Circuits and Systems (WMCS) - A Simple, Remote, Ultra-Sonic Based Personal Emergency Response System

Regev, Nir, Wulich, Dov

Year:

2020

File:

PDF, 1.18 MB

2020

48

Characteristics of Clinically Asymptomatic Patients with SARS-CoV-2 Infections, Case Series

Goldenfeld, Miki, Nir-Paz, Ran, Segal, Gadi, Bar-On, Elhanan, Mendelson, Ella, Mandelboim, Michal, Wolf, Dana G., Marom, Edith M., Israely, Tomer, Achdout, Hagit, Rahav, Galia, Hanage, W.P., Regev-Yoc

Journal:

Prehospital and Disaster Medicine

Year:

2020

File:

PDF, 861 KB

2020